BC’s interior tree fruit industry generates $130 million in wholesale revenue, contributes $900 million in economic activity, and directly employs 1,500 people annually. 95% of the cherries grown in Canada grow in BC and it is estimated that 80% of new cherry plantings in the world are of AAFC’s varieties developed in BC. In order to maintain a global competitive edge new genomic research is underway to protect BC cultivars, as it is difficult to distinguish between similar varieties based on visual and taste characteristics alone. Summerland Varieties Corporation (SVC) is mandated with obtaining Plant Breeders’ Rights (PBR) and Trademarks for varieties entering the marketplace to protect the assets of BC and Canadian growers. This project aims to create the first reference genome sequences for cherry and apple cultivars developed in BC, which would allow for the development of undisputed genomic tools to help enforce PBRs for tree fruit cultivars developed from BC breeding programs. Genomic signatures for each variety will enable better protection in cases where there is a dispute between parties. The signatures will also stimulate further research and development of new Canadian adapted varieties leading to a more nimble and sustainable industry.